| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_80_Fem_R1.fastq.gz | 33,616,951 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_80_Fem_R2.fastq.gz | 33,616,951 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_81_Fem_R1.fastq.gz | 33,633,649 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_81_Fem_R2.fastq.gz | 33,633,649 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_84_Fem_R1.fastq.gz | 32,688,932 | 0 | 35-150 | 50 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_84_Fem_R2.fastq.gz | 32,688,932 | 0 | 35-150 | 51 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_89_Fem_R1.fastq.gz | 35,599,860 | 0 | 35-150 | 45 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_89_Fem_R2.fastq.gz | 35,599,860 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_78_Fem_R1.fastq.gz | 33,710,024 | 0 | 35-150 | 45 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_78_Fem_R2.fastq.gz | 33,710,024 | 0 | 35-150 | 45 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_82_Fem_R1.fastq.gz | 30,045,929 | 0 | 35-150 | 45 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_82_Fem_R2.fastq.gz | 30,045,929 | 0 | 35-150 | 45 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_83_Fem_R1.fastq.gz | 32,193,899 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_83_Fem_R2.fastq.gz | 32,193,899 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_85_Fem_R1.fastq.gz | 33,316,915 | 0 | 35-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_85_Fem_R2.fastq.gz | 33,316,915 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_79_Fem_R1.fastq.gz | 26,558,035 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_79_Fem_R2.fastq.gz | 26,558,035 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_86_Fem_R1.fastq.gz | 31,048,376 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_86_Fem_R2.fastq.gz | 31,048,376 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_88_Fem_R1.fastq.gz | 32,895,183 | 0 | 35-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_88_Fem_R2.fastq.gz | 32,895,183 | 0 | 35-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_95_Fem_R1.fastq.gz | 30,558,083 | 0 | 35-150 | 45 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_95_Fem_R2.fastq.gz | 30,558,083 | 0 | 35-150 | 45 |
Library Sizes ranged between 26,558,035 and 35,599,860 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Drerio Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Drerio Transcriptome
Universal Adapter Content
Total overrepresented sequences for each library
| Sequence | Total | Present In | Overall Percentage | Max_Percentage | Possible_Source |
|---|---|---|---|---|---|
| GGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATC | 3,249,815 | 12 | 0.4211069% | 1.115385% | No Hit |
| GTGGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGC | 3,215,637 | 12 | 0.4166781% | 1.761673% | No Hit |
| CTCCTGAAAAGGTTGTATCCTTTGTTAAAGGGGCTGTACCCTCTTTAACT | 3,080,468 | 12 | 0.3991631% | 1.132295% | No Hit |
| CGAGAGGCTCTAGTTGATATACTACGGCGTAAAGGGTGGTTAAGGAACAA | 2,810,794 | 12 | 0.3642191% | 1.037056% | No Hit |
| CTGGGGGAGCGGCCGCCCCGCGGCGCCCCCTCTCGTTCCCGTCTCCGGAG | 2,476,229 | 10 | 0.3208666% | 1.670850% | No Hit |
| GTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATCT | 2,327,892 | 12 | 0.3016453% | 0.807325% | No Hit |
| CCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCC | 2,165,613 | 12 | 0.2806174% | 1.332439% | No Hit |
| CCTCCTTCAAGTATTGTTTCATGTTACATTTTCGTATATTCTGGGGTAGA | 2,112,453 | 12 | 0.2737289% | 0.835466% | No Hit |
| GGGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTT | 1,763,107 | 11 | 0.2284611% | 0.690390% | No Hit |
| CCCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATC | 1,349,526 | 12 | 0.1748698% | 0.794529% | No Hit |
| GGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTTA | 1,304,192 | 11 | 0.1689955% | 0.531636% | No Hit |
| CTGGGAGATGAATAAAAGTTCAGCTTCGTACACCCCAAATTAAAAAATTA | 1,294,226 | 10 | 0.1677041% | 0.481060% | No Hit |
| GGCCCGGCGCACGTCCAGAGTCGCCGCCGCACACCGCAGCGCATCCCCCC | 1,286,449 | 9 | 0.1666964% | 0.954118% | No Hit |
| GGCCCGGCGCACGTCCAGAGTCGCCGCCGCGCACCGCAGCGCATCCCCCC | 1,229,243 | 9 | 0.1592837% | 0.791561% | No Hit |
| GGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCAT | 1,201,907 | 12 | 0.1557416% | 0.800512% | No Hit |
| GGGGGAGCGGCCGCCCCGCGGCGCCCCCTCTCGTTCCCGTCTCCGGAGCG | 1,194,580 | 9 | 0.1547921% | 0.849190% | No Hit |
| GGGGTGTACGAAGCTGAACTTTTATTCATCTCCCAGACAACCAGCTATTG | 1,159,508 | 12 | 0.1502476% | 1.095062% | No Hit |
| GCCCACTACGACAACGTGTTTTGTAAATTATGATCTTTATTCTCCTGAAA | 1,124,368 | 10 | 0.1456942% | 0.439807% | No Hit |
| CAGTGGCGTGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGCGGA | 1,075,489 | 11 | 0.1393605% | 0.656409% | No Hit |
| CGGGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGG | 1,023,269 | 12 | 0.1325939% | 0.726131% | No Hit |
| GCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGA | 954,310 | 12 | 0.1236583% | 0.481652% | No Hit |
| CTCCTTCAAGTATTGTTTCATGTTACATTTTCGTATATTCTGGGGTAGAA | 930,706 | 10 | 0.1205997% | 0.398321% | No Hit |
| GAAGAAATTCATAATTCTGACAATAATATCTTACTTCCCTAAAAATACCA | 921,563 | 10 | 0.1194150% | 0.380088% | No Hit |
| CTTAGACGACCTGGTAGTCCAAGGCTCCCCCAGGAGCACCATATCGATAC | 912,984 | 11 | 0.1183033% | 0.542948% | No Hit |
| ATAAAAGTTCAGCTTCGTACACCCCAAATTAAAAAATTAAATTTAATTTA | 907,268 | 9 | 0.1175626% | 0.427929% | No Hit |
| GGGGTAACGATGTCTGTTGTGGATTTTTCTCAGTTTTTAACTCACATTGC | 868,461 | 10 | 0.1125341% | 0.350438% | No Hit |
| CTCTAGTTGATATACTACGGCGTAAAGGGTGGTTAAGGAACAATGTAAAA | 860,273 | 12 | 0.1114731% | 0.437826% | No Hit |
| GGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGGAC | 822,637 | 11 | 0.1065962% | 0.449608% | No Hit |
| CAGCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAA | 768,730 | 12 | 0.0996110% | 0.524002% | No Hit |
| CGGGTCGGGTGGGTAGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGG | 765,610 | 12 | 0.0992068% | 0.564748% | No Hit |
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
locale: LC_CTYPE=en_AU.UTF-8, LC_NUMERIC=C, LC_TIME=en_AU.UTF-8, LC_COLLATE=en_AU.UTF-8, LC_MONETARY=en_AU.UTF-8, LC_MESSAGES=en_AU.UTF-8, LC_PAPER=en_AU.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_AU.UTF-8 and LC_IDENTIFICATION=C
attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base
other attached packages: readr(v.1.3.1), stringr(v.1.4.0), magrittr(v.1.5), scales(v.1.1.0), pander(v.0.6.3), kableExtra(v.1.1.0), dplyr(v.0.8.3), ngsReports(v.1.1.4), tibble(v.2.1.3), ggplot2(v.3.2.1) and BiocGenerics(v.0.32.0)
loaded via a namespace (and not attached): bitops(v.1.0-6), matrixStats(v.0.55.0), lubridate(v.1.7.4), webshot(v.0.5.1), RColorBrewer(v.1.1-2), httr(v.1.4.1), GenomeInfoDb(v.1.22.0), tools(v.3.6.1), backports(v.1.1.5), R6(v.2.4.1), lazyeval(v.0.2.2), colorspace(v.1.4-1), withr(v.2.1.2), tidyselect(v.0.2.5), compiler(v.3.6.1), rvest(v.0.3.5), Biobase(v.2.46.0), Cairo(v.1.5-10), flashClust(v.1.01-2), xml2(v.1.2.2), DelayedArray(v.0.12.0), plotly(v.4.9.1), ggdendro(v.0.1-20), labeling(v.0.3), digest(v.0.6.22), Rsamtools(v.2.2.1), rmarkdown(v.1.17), XVector(v.0.26.0), pkgconfig(v.2.0.3), htmltools(v.0.4.0), fastmap(v.1.0.1), FactoMineR(v.1.42), highr(v.0.8), htmlwidgets(v.1.5.1), rlang(v.0.4.1), rstudioapi(v.0.10), shiny(v.1.4.0), farver(v.2.0.1), zoo(v.1.8-6), hwriter(v.1.3.2), jsonlite(v.1.6), crosstalk(v.1.0.0), BiocParallel(v.1.20.0), RCurl(v.1.95-4.12), GenomeInfoDbData(v.1.2.2), leaps(v.3.0), Matrix(v.1.2-17), Rcpp(v.1.0.3), munsell(v.0.5.0), S4Vectors(v.0.24.0), lifecycle(v.0.1.0), scatterplot3d(v.0.3-41), stringi(v.1.4.3), yaml(v.2.2.0), MASS(v.7.3-51.4), SummarizedExperiment(v.1.16.0), zlibbioc(v.1.32.0), plyr(v.1.8.4), grid(v.3.6.1), promises(v.1.1.0), crayon(v.1.3.4), lattice(v.0.20-38), Biostrings(v.2.54.0), hms(v.0.5.2), zeallot(v.0.1.0), knitr(v.1.26), pillar(v.1.4.2), GenomicRanges(v.1.38.0), reshape2(v.1.4.3), stats4(v.3.6.1), glue(v.1.3.1), evaluate(v.0.14), ShortRead(v.1.44.0), latticeExtra(v.0.6-28), data.table(v.1.12.6), httpuv(v.1.5.2), vctrs(v.0.2.0), gtable(v.0.3.0), purrr(v.0.3.3), tidyr(v.1.0.0), assertthat(v.0.2.1), xfun(v.0.11), mime(v.0.7), xtable(v.1.8-4), later(v.1.0.0), viridisLite(v.0.3.0), truncnorm(v.1.0-8), GenomicAlignments(v.1.22.1), IRanges(v.2.20.0), cluster(v.2.1.0) and ellipsis(v.0.3.0)